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publications by UHNMAC users: all, by year
home about us publications publications by UHNMAC users: all, by year

We are a Certified Agilent Service Provider and an Authorised Affymetrix Service Provider. We offer services on the Affymetrix, Agilent, Illumina and in-house array platforms. Our services include array-based services such as gene expression profiling, array CGH, ChIP-on-Chip, data analysis, informatics and data mining; scanning services and integrity testing. In addition, we also offer data validation, including Luminex Technology (using the Bio-Plex instrument from Bio-Rad), Nanostring Technology.

There are many publications presenting experimental data obtained through UHNMAC services and arrays. This list is constantly being updated. Browse through our list and let us know if you have one to add!

Publications citing use of UHNMAC microarrays

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2012 (3 publications)
Cook DJ, Teves L, Tymianski M. Treatment of stroke with a PSD-95 inhibitor in the gyrencephalic primate brain. Nature. 2012, 483:213.

Dhillon SS, Gingerich S, Virtanen C, et al. Gene array analysis of embryonic - versus adult-derived hypothalamic NPY-expressing cell lines. Mol Cell Endocrinol. 2012 358(1):116-26

Gilpin S, Lung KC, Sato M, et al. Altered progenitor cell and cytokine profiles in bronchiolitis obliterans syndrome.. J Heart Lung Transplant. 2012 Feb;31(2):222-8

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2011 (13 publications)
Badea I, Virtanen C, Verrall RE, et al. Effect of topical interferon-γ gene therapy using gemini nanoparticles on pathophysiological markers of cutaneious scleroderma in Tsk/+ mice. Gene Therapy. 2011 online November, 2011

Basford CL, Prentice KJ, Hardy AB, et al. The functional and molecular characterisation of human embryonic stem cell-derived insulin-positive cells compared with adult pancreatic beta cells. Diabetologia. 2011 online November, 2011

Franks SE, Campbell CI, Barnett EF et al. Transgenic IGF-IR overexpression induces mammary tumors with basal-like characteristics, whereas IGF-IR-independent mammary tumors express a claudin-low gene signature. Oncogene. 2011 online October, 2011

Gandhi R, Takahashi M, Virtanen C et al. Microarray analysis of the infrapatellar fat pad in knee osteoarthritis: relationship with joint inflammation. J. Rheumatol. 2011 38(9):1966-1972

George SH, Greenaway J, Milea A et al. Identification of abrogated pathways in fallopian tube epithelium from BRCA1 mutation carriers. J Pathol. 2011 225(1):106-17

Ichim CV, Atkins HL, Iscove NN et al. Identification of a role for the nuclear receptor EAR-2 in the maintenance of clonogenic status within the leukemia cell hierarchy. Leukemia. 2011 online June, 2011

Siu A, Virtanen C and Jongstra J. PIM kinase isoform specific regulation of MIG6 expression and EGFR signaling in prostate cancer cells.. Oncotarget. 2011 online Dec, 2011

Karisch R, Fernandez M, Taylor P et al. Global proteomic assessment of the classical protein-tyrosine phosphatome and "redoxome". Cell 2011 146(5):826-40

Navab R, Strumpf D, Bandarchi B et al. Prognostic gene-expression signature of carcinoma-associated fibroblasts in non-small cell lung cancer. Proc. Natl. Acad. Sci. USA, 2011 108(17):7160-65

Northcott PA, Shih DJ, Remke M et al. Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples. Acta Neuropathol. 2011 online November, 2011

Shimizu M, Cohen B, Goldvasser P et al. Plasminogen activator uPA is a direct transcriptional target of the JAG1-notch receptor signaling pathway in breast cancer. Cancer Res. 2011 71(1):277-86

Tone AA, Virtanen C, Shaw PA et al. Decreased progesterone receptor isoform expression in luteal phase fallopian tube epithelium and high-grade serous carcinoma. Endocr Relat Cancer. 2011 18(2):221-34

Tremblay E, Ferretti E, Babakissa C et al. Gene-expression profile analysis in the mid-gestation human intestine discloses greater functional immaturity of the colon as compared with the ileum.. J Pediatr Gastroenterol Nutr. 2011 Jun;52(6):670-8

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2010 (12 publications)
Alajez NM, Shi W, Hui AB, et al. Enhancer of Zeste homolog 2 (EZH2) is overexpressed in recurrent nasopharyngeal carcinoma and is regulated by miR-26a, miR-101, and miR-98. Cell Death Dis. 2010 1(10):e85

Bouchard L, Rabasa-Lhoret R, Faraj M, et al. Differential epigenomic and transcriptomic responses in subcutaneous adipose tissue between low and high responders to caloric restriction. Am J Clin Nutr 2010, 91(2):309

Dellett M, O'Hagan KA, Colyer HAA, et al. Identification of Gene Networks Associated with Acute Myeloid Leukemia by Comparative Molecular Methylation and Expression Profiling. Biomarkers in Cancer 2010, 2:43

Jackson, K, Paris, J, Takahashi M. ChIPing away at global transcriptional regulation Methods Mol Biol. 2010 632:173

May T, Virtanen C, Sharma M, et al. Low malignant potential tumors with micropapillary features are molecularly similar to low-grade serous carcinoma of the ovary. Gynecologic Oncology 2010 117(1):9-17

Nguyen A, Rauch TA, Pfeifer GP, et al. Global methylation profiling of lymphoblastoid cell lines reveals epigenetic contributions to autism spectrum disorders and a novel autism candidate gene, RORA, whose protein product is reduced in autistic brain. FASEB Journal 2010 24(8):3036

Singh RR, Ho D, Nilchi A, et al. A CMOS/Thin-Film fluorescence contact imaging microsystem for DNA analysis IEEE Circuits and Systems I: Regular Papers 2010 57(5):1029

Spagnuolo PA, Hu J, Hurren R, et al. The antihelmintic flubendazole inhibits microtubule function through a mechanism distinct from Vinca alkaloids and displays preclinical activity in leukemia and myeloma. Blood 2010 115(23):4824

Tsao J, Yau, P, Winegarden N. Profiling microRNA expression with the Illumina BeadChip platform Methods Mol Biol. 2010 632:73

van Straten EME, Bloks VW, Huijkman NCA, et al. The liver X-receptor gene promoter is hypermethylated in a mouse model of prenatal protein restriction. Am J Physiol Regul Integr Comp Physiol 2010, 298:R275

Vivekanandan P, Daniel HDJ, Kannangai R, et al. Hepatitis B Virus Replication Induces Methylation of both Host and Viral DNA. J Virology 2010 84(9):4321

Wong WW, Boutros PC, Wasvlishen AR, et al. Characterization of the apoptotic response of human leukemia cells to organosulfur compounds. BMC Cancer 2010 10:351

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2009 (18 publications)
Bane AL, Pinnaduwage D, Colby S et al. Expression profiling of familial breast cancers demonstrates higher expression of FGFR2 in BRCA2-associated tumors . Breast Cancer Res Treat 2009, 117(1):183

Behera RK, Nayak R. Expression Profiling of Nucleotide Metabolism-Related Genes in Human Breast Cancer Cells After Treatement wih 5-Fluorouracil. Cancer Investigation 2009 Feb 14 [Epub ahead of print]

Frontini M, Vijayakumar M, Garvin A, Clarke N. A ChIP-chip approach reveals a novel role for transcription factor IRF1 in the DNA damage response. Nuc Acids Res 2009, 37(4):1073

Goranov AI, Cook M, Ricicova M, et al. The rate of cell groth is governed by cell cycle stage. Genes Dev 2009, 23:1408

Hill JJ, Tremblay T-L, Cantin C, et al. Glycoproteomic analysis of two mouse mammary cell lines during transforming growth factor (TGF)-β induced epithelial to mesenchymal transition. Proteome Science 2009, 7:2

House B, Kus JV, Prayitno N, et al. Acid-stress-induced changes in enterohaemorrhagic Escherichia coli O157:H7 virulence. Microbiology 2009, 155:2907

Hussein S, Michael P, Brabant D, et al. Charaterization of human septic sera induced gene expression modulation in human myocytes. Int J Clin Exp Med 2009, 2:131-148

Kaminsky ZA, Tang T, Wang S-C, et al. DNA methylation profiles of monozygotic and dizygotic twins. Nature Genetics 2009, 41:240

Marin MJ, Flandez M, Bermejo C, et al. Different modulation of the outputs of yeast MAPK-mediated pathways by distinct stimuli and isoforms of the dual-specificity phosphatase Msg5. Mol Genet Genomics 2009, 281(3):345

Molin C, Jauhiainen A, Warringer J, Nerman O, Sunnerhagen P. mRNA stability changes preced changes in steady-state mRNA amounts during hyperosmotic stress. RNA 2009, 15:600

Morettin A, Ward A, Nantais J, Hudson JW. Gene expression patterns in heterozygous Plk4 murine embryonic fibroblasts. BMC Genomics 2009, 10:319

Penaloza C, Estevez B, Orlanski S, et al. Sex of the cell dictates its response: differential gene expression and sensitivity to cell death inducing stress in male and female cells. FASEB J 2009, 23(6):1869

Peterkova M, Koutna I, Tesarova L, et al. Microarray Analysis Using a Limited Amount of Cells. Folia Biologica (Praha) 2009, 55:53-60

Pru JK, Kaneko-Tarui T, Jurisicova A, et al. Induction of proapoptotic gene expression and recruitment of p53 herald ovarian follicle loss caused by polycyclic aromatic hydrocarbons. Reprod Sci 2009,16(4):347

Purbey PK, Singh S, Notani D, Kumar PP, Limaye AS, Galande S. Acetylation-Dependent Interaction of SATB1 and CtBP1 Mediates Transcriptional Repression by SATB1. Mol Cell Biol 2009, 29(5):1321

Rahmatpanah FB, Carstens S, Hooshmand SI, et al. Large-scale analysis of DNA methylation in chronic lymphocytic leukemia. Epigenomics 2009,1(1):39-61

Veitch ZW, Guo B, Hembruff SL, et al. Induction of 1C aldoketoreductases and other drug dose-dependent genes upon acquisition of anthracycline resistance. Pharmacogenet Genomics 2009, 19(6):477

Wang C, Iakovlev VV, Wong V, et al. Genomic alterations in primary breast cancers compared with their sentinel and more distal lymph node metastases: An aCGH study. Genes Chromosomes Cancer 2009, 48(12):1091

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2008 (31 publications)
Anraku M, Cameron MJ, Waddell TK et al. Impact of Human Donor Lung Gene Expression Profiles on Survival after Lung Transplantation: A Case-Control Study . Am J of Transplantation 2008, 8(10):2140-2148

Bhan S, May W, Warren SL et al. Global gene expression analysis reveals specific and redundant roles for H1 variants, H1c adn H1o, in gene expression regulation . Gene 2008, Jun 18 414(1-2):10

Borland MK, Trimmer PA, Rubinstein JD, et al. Chronic, low-dose rotenone reproduces Lewy neurites found in early stages of Parkinson's disease, reduces mitochondrial movement and slowly kills differentiated SH-SY5Y neural cells . Mol Neurodegener 2008, 3:21

Camats M, Guil S, Kokolo M, Bach-Elias M. P68 RNA Helicase (DDX5) Alters Activity of Cis- and Trans-Acting Factors of the Alternative Splicing of H-Ras . PloS ONE 2008, 3(8):e2926

Chen L, Borozan I, Milkiewicz P, Sun J, Meng X, Coltescu C, Edwards AM, et al. Gene expression profiling of early primary biliary cirrhosis: possible insights into the mechanism of action of ursodeoxycholic acid . Liver International, 2008, 28(7):997

Cui Y, Ramnarain DB, et al. Genome wide expression analysis of the CCR4-NOT complex indicates that it consists of three modules with the NOT module controlling SAGA-responsive genes . Mol Genetics and Genomics 2008, 279(4):323

Flatscher-Bader T, Zuvela N, Landis N, Wilce PA. Smoking and alcoholism target genes associated with plasticity and glutamate transmission in the human ventral tegmental area . Hum Mol Genet 2008, 17(1):38

Gerbe F, Cox B, Rossant J, Chazaud C. Dynamic expression of Lrp2 pathway members reveals progressive epithelial differentiation of primitive endoderm in mouse blastocyst . Dev Biol 2008, 313:594

Gerstein AC, McBride RM, Otto SP. Ploidy reduction in Saccharomyces cerevisiae . Biol Lett 2008, 4:91-94

Gowher H, Stuhlmann H, Felsenfeld G. Vezf1 regulates genomic DNA methylation through its effects on expression of DNA methyltransferase Dnmt3b . Genes Dev 2008, 22:2075-2084

Hauck TS, Ghazani AA, Chan WCW. Assessing the Effect of Surface Chemistry on Gold Nanorod Uptake, Toxicity, and Gene Expression in Mammalian Cells . Small, 2008, 4(1):153

Hausmann A, Samans B, Lill R, Muhlenhoff U. Cellular and Mitochondrial Remodeling upon Defects in Iron-Sulfur Protein Biogenesis . J Biol Chem, 2008, 283(13):8318

Hoemme C, Peerzada A, Behre G, Wang Y, McClelland M, Nieselt K, Zschunke M, Disselhoff C, Agrawal S, et al. Chromatin modifications induced by PML-RARα repress targets in leukemogenesis as analyzed by ChIP-Chip . Blood, 2008, 111:2887

Huang W, Zhu C, Wang H, Horvath E, Eklund EA. The Interferon Consensus Sequence-binding Protein (ICSBP/IRF8) Represses PTPN13 Gene Transcription in Differentiating Myeloid Cells . Biol Chem 2008, 283(12):7921

Iakovlev VV, Arneson NCR, Wong V, et al. Genomic Differences Between Pure Ductal Carcinoma In Situ of the Breast and that Associated with Invasive Disease: a Calibrated aCGH Study . Clin Cancer Res 2008, 14:4446

Ilina Y, Sloma E, Maciaszczyk-Dziubinska E, Novotny M, Thorsen M, Wysocki R, Tamas MJ. Characterization of the DNA binding motif of the arsenic-responsive transcription factor Yap8p . Biochem J 2008, 415:467

Kaminsky Z, Petronis A, Wang SC, Levine B, Ghaffar O, Floden D, Feinstein A. Epigenetics of personality traits: an illustrative study of identical twins discordant for risk-taking behavior . Twin Res Hum Genet. 2008 11(1):1-11

Lai HC, Lin YW, Huang TH, Yan P, Huang RL, Wang HC, Liu J, Chan MW, Chu TY, Sun CA, Chang CC, Yu MH. Identification of novel DNA methylation markers in cervical cancer . Int J Cancer. 2008 Jul 1 123(1):161 (CGI databases)

Marquis J-F, Nantel A, LaCourse R, et al. Fibrotic Response as a Distinguishing Feature of Resistance and Susceptibility to Pulmonary Infection with Mycobacterium tuberculosis in Mice . Infect Immun 2008, 76(1):78-88

Miao F, Wu X, Zhang L, Riggs AD, Natarajan R. Histone Methylation Patterns Are Cell-Type Specific in Human Monocytes and Lymphocytes and Well Maintained at Core Genes . J Immunology 2008, 180:2264-2269

Mill J, Tang T, Kaminsky Z, Khare T, Yazdanpanah S, Bouchard L, Jia P, Assadzadeh A, Flanagan J, Schumacher A, Wang SC, Petronis A. Epigenomic profiling reveals DNA-methylation changes associated with major psychosis . Am J Hum Genet. 2008 Mar; 82(3):696

Novikova SI, He F, Bai J, Cutrufello NJ, Lidow MS, Undieh AS. Maternal Cocaine Administration in Mice Alters DNA Methylation and Gene Expression in Hippocampal Neurons of Neonatal and Prepubertal Offspring . PLoS ONE 2008, 3(4):e1919

Onken MD, Worley LA, Harbour JW. A Metastasis Modifier Locus on Human Chromosome 8p in Uveal Melanoma Identified by Integrative Genomic Analysis . Clin Cancer Res 2008, 14(12):3737

Ponzielli R, Boutros PC, Katz S, Stojanova A, Hanley AP, Khosravi F, Bros C, Jurisica I, Penn LZ. Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies . Nucleic Acids Res. 2008 Oct 21 [Epub ahead of print]

Prasher B, Negi S, Aggarwal S, et al. Whole genome expression and biochemical correlates of extreme constitutional types defined in Ayurveda . J Translational Medicine 2008, 6(48)

Schäfer G, McEvoy CRE, Patterton H-G. The Saccharomyces cerevisiae linker histone Hh01p is essential for chromatin compaction in stationary phase and is displaced by transcription . PNAS 2008, 105(39):14838-14843

Schumacher A, Weinhäusl A, Petronis A. Application of microarrays for DNA methylation profiling . Methods Mol Biol. 2008; 439:109 PMID: 18370099(book chapter)

Singh U, Rizvi F, Yu Y, et al. Characterization of a novel obesity phenotype caused by interspecific hybridization. Arch Physiol Biochem 2008, 114(5):301

Wong V, Wang D-Y, Warren K, et al. The effects of timing of fine needle aspiration biopsies on gene expression profiles in breast cancers . BMC Cancer 2008, 8:277

Yu Y, Singh U, Shi W, et al. Influence of murine maternal diabetes on placental morphology, gene expression, and function . Archives of Physiology and Biochemistry 2008, 114(2):99-110

Zhang Y, Liu T, Yan P, et al. Identification and characterization of CCAAT/Enhancer Binding proteindelta (C/EBPdelta) target genes in G0 growth arrested mammary epithelial cells . BMC Mol Biol 2008, 9:83

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2007 (23 publications)
Abruzzi K, Denome S, Olsen JR, et al. A Novel Plasmid-Based Microarray Screen Identifies Suppressors of rrp6∆ in Saccaromyces cerevisiae. Mol Cell Biol, 2007, 27(3):1044-1055

Baron C, Somogy R, Greller LD, et al. Prediction of Graft-Versus-Host Disease in Humans by Donor Gene-Expression Profiling. PLoS Med, 2007, 4(1):e23

Bergstrom U, Olsson JA, Hvidsten TR, et al. Differential gene expression in the olfactory bulb following exposure to the olfactory toxicant 2,6-dichlorophenyl methylsulphone and its 2,5-dichlorinated isomer in mice. Neuro Toxicology, 2007, 28(6):1120

Bianchini M, Martinelli G, Renzulli M, et al. cDNA microarray study to identify expression changes relevant for apoptosis in K562 cells co-treated with amifostine and imatinib. Cancer Chemotherapy and Pharmacology, 2007, 59(3): 349-360

Cameron MJ, Ran L, Xu, L, et al. Interferon-Mediated Immunopathological Events Are Associated with Atypical Innate and Adaptive Immune Responses in Patients with Severe Acute Respiratory Syndrome. J Virol, 2007, 81(16):8692

Chattopadhyay I, Kapur S, Purkayastha J, et al. Gene expression profile of esophageal cancer in North East India by cDNA microarray analysis. World J Gastroenterol 2007, 13(9):1438

Estécio MRH, Yan PS, Ibrahim AEK, et al. High-throughput methylation profiling by MCA coupled to CpG island microarray. Genome Res, 2007, 17:1529-1536

Ghazani AA, Arneson N, Warren K, et al. Genomic Alterations in Sporadic Synchronous Primary Breast Cancer Using Array and Metaphase Comparative Genomic Hybridization. Neoplasia 2007, 9(6):511

Gilbert I, Bissonneault G, Vallee M, Robert C. A molecular analysis of the population of mRNA in bovine spermatozoa. Reproduction 2007, 133:1073-1086

Golkari S, Gilbert J, Prashar S, Procunier JD. Microarray analysis of Fusarium graminearum-induced wheat genes: identification of organ-specific and differentially expressed genes. Plant Biotechnol J, 2007, 5(1):38-49 (UHNMAC custom printed arrays)

Haque T, Faury D, Albrecht S, et al. Gene Expression Profiling from Formalin-Fixed Paraffin-Embedded Tumors of Pediatric Glioblastoma. Clin Cancer Res 2007, 13(21):6284

Hickman MJ & Winston F. Heme Levels Switch the Function of Hap1 of Saccharomyces cerevisiae between Transcriptional Activator and Transcriptional Repressor. Mol Cell Biol 2007, 27(21):7414

Ho S, Tang W. Techniques used in studies of epigenome dysregulation due to aberrant DNA methylation: An emphasis on fetal-based adult diseases. Reprod Toxicol, 2007, 23(3):267

Joseph-Strauss D, Zenvirth D, Simchen G, Barkai N. Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. Genome Biology 2007, 8:R241

Karar J, Dolt KS, Kishra MK et al. Expression and functional activity of pro-oxidants and antioxidants in murine heart exposed to acute hypobaric hypoxia. FEBS Letters 2007, 581(24):4577

Koren A, Tirosh I, Barkai N. Autocorrelation analysis reveals widespread spatial biases in microarray experiments. BMC Genomics 2007, 8:164

Mamane Y, Petroulakis E, Martineau Y, et al. Epigenetic Activation of a Subset of mRNAs by eIF4E Explains Its Effects on Cell Proliferation. PLoS ONE, 2007, 2(2):e242

Pandita A, Balasubramaniam A, Perrin R, Shannon P, Guha A. Malignant and benign ganglioglioma: A pathological and molecular study. Neuro Oncol, 2007, 9(2):124

Panigrahi P, Braileanu GT, Chen H, Stine OC. Probiotic bacteria change Escherichia coli-induced gene expression in cultured colonocytes: Implications in intestinal pathophysiology. World J Gastroenterol, 2007, 13(47):6370

Prasanna SJ, Saha B, Nandi D. Involvement of oxidative and nitrosative stress in modulation of gene expression and functional responsed by IFN-γ. International Immunology, 2007, 19(7):867

Siriwardhana N, Wang H-CR. Precancerous carcinogenesis of human breast epithelial cells by chronic exposure to benzo[a]pyrene. Mol Carcinogenesis, 2007, 47(5):338

Wong WW-L, Clendening JW, Martirosyan A, et al. Determinants of sensitivity to lovastatin-induced apoptosis in multiple myeloma. Mol Cancer Therapeutics, 2007, 6:1886

Wu J, Wang S-H, Potter D, et al. Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing. BMC Genomics 2007, 8:131

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2006 (29 publications)
Anderson JB, Ricker N, Sirjusingh C: Antagonsim between Two Mechanisms of Antifungal Drug Resistance. Eukaryotic Cell, 2006, 5(8):1243-1251

Arguello M, Paz S, Hernandez E, Corriveau-Bourque C, Fawaz LM, Hiscott J, Lin R: Leukotriene A4 Hydrolase Expression in PEL Cells Is Regulated at the Transcriptional Level and Leads to Increased Leukotriene B4 Production. J Immunol, 2006, 176:7051-7061

Borozan I, Chen L, Sun J, Tannis LL, Guindi M, Rotstein OD, Heathcote J, Edwards AM, Grant D, McGilvray ID: Gene Expression Profiling of Acute Liver Stress During Living Donor Liver Transplantation. American Journal of Transplantation, 2006, 6(4):806

Fagoonee S, Di Cunto F, Vozzi D, Volinia S, Pellegrino M, Gasparini P, Silengo L, Altruda F, Tolosano E: Microarray and large-scale in silico-based identification of genes functionally related to Haptoglobin and/or Hemopexin. DNA Cell Biol, 2006, 25(6):323-30

Flanagan JM, Popendikyte V, Pozdniakovaite N, Sobolev M, Assadzadeh A, Schumacher A, Zangeneh M, Lau L, Virtanen C, Wang SC, Petronis A: Intra- and Interindividual Epigenetic Variation in Human Germ Cells. Am J Hum Genet, 2006, 79(1):67-84

Friedlander G, Joseph-Strauss D, Carmi M, Zenvirth D, Simchen G, Barkai N. Modulation of the transcription regulatory program in yeast cells committed to sporulation. Genome Biology, 2006, 7:R20

Gebhard C, Schwarzfischer L, Pham TH, Schilling E, Klug M, Andreesen R, Rehli M: Genome-Wide Profiling of CpG Methylation Identifies Novel Targets of Aberrant Hypermethylation in Myeloid Leukemia. Cancer Research, 2006, 66:6118-6128

Gerstein AC, Chun HJE, Grant A, Otto SP: Genomic Convergence toward Diploidy in Saccharomyces cerevisiae. PLoS Genet, 2006, 2(9):e145

Ghazani AA, Arneson NCR, Warren K, Done SJ. Limited tissue fixation times and whole genome amplification do not impact array CGH profiles. J Clin Pathol 2006, 59:311-315

Groeneweg M, Kanters E, Vergouwe MN, Duerink H, Kraal G, Hofker MH, de Winther MPJ. Lipopolysaccharide-induced gene expression in murine macrophages is enhanced by prior exposure to oxLDL. J Lipid Res, 2006, 47:2259

Gros R, Ding Q, Chorazyczewski J, Andrews J, Pickering JG, Hegele RA, Feldman RD. The Impact of Blunted β-Adrenergic Responsiveness on Growth Regulatory Pathways in Hypertension. Mol Pharmacol, 2006, 69:317

Ibrahim AEK, Thorne NP, Baird K, Barbosa-Morais NL, Tavare S, Collins VP, Wyllie AH, Arends MJ, Brenton JD: MMASS: an optimized array-based method for assessing CpG island methylation. Nucleic Acids Res, 2006, 34(20):e136

Jansova E, Koutna I, Krontorad P, Svoboda Z, Krivankova S, Zaloukik J, Kozubek M, Kozubek S: Comparative transcriptome maps: a new approach to the diagnosis of colorectal carcinoma patients using cDNA microarrays. Clinical Genetics, 2006, 69(3):218-227

Kultima K Fernandez EL, Scholz B, Gustafson A-L, Dencker L, Stigson M. Cadmium-induced gene expression changes in the mouse embryo, and the influence of pretreatment with zinc. Reprod Toxicol, 2006, 22(4):636

Liang G, Audas TE, Li Y, Cockram GP, Dean JD, Martyn AC, Kokame K, Lu R: Luman/CREB3 Induces Transcription of the Endoplasmic Reticulum (ER) Stress Response Protein Herp through an ER Stress Response Element. Mol Cell Biol, 2006, 26(21):7999-8010

Mahmoud-Ahmed, AS, Atkinson S, Wong CS: Early gene expression profile in mouse brain after exposure to ionizing radiation. Radiation Research, 2006, 165(2):142-154

Millar CB, Xu F, Zhang K, Grunstein M. Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast. Genes Dev, 2006, 20(6):711

Nguyen LN, Holdren MS, Nguyen AP, Furuya MH, Bianchini M, Levy E, Mordoh J, Liu A, Guncay GD, Campbell JS, Parks WT: Sorting Nexin 1 Down-Regulation Promotes Colon Tumorigenesis. Clin Cancer Res, 2006, 12(23):6952-6959

Packer L, Pavey S, Parker A, Stark M, Johansson P, Clarke B, Pollock P, Ringner M, Hayward N: Osteopontin is a downstream effector of the PI3-kinase pathway in melanomas that is inversely correlated with functional PTEN. Carcinogenesis, 2006, 27(9):1778-1786

Rauch T, Li H, Wu X, Pfeifer GP. MIRA-Assisted Microarray Analysis, a New Technology for the Determination of DNA Methylation Patterns, Identifies Frequent Methylation of Homeodomain-Containing Genes in Lung Cancer Cells. Cancer Research 2006, 66:7939-7947

Riou C, Yassine-Diab B, Van grevenynghe J, et al. Convergence of TCR and cytokine signaling leads to FOXO3a phosphorylation and drives the survival of CD4+ central memory T cells. JEM 2006, 204(1):79

Schimmer BP, Cordova M, Cheng H, Tsao A, Goryachev A, Schimmer AD, Morris Q: Global Profiles of Gene Expression Induced by Adrenocorticotropin in Y1 Mouse Adrenal Cells. Endocrinology, 2006, 147(5):2357-2367

Schumacher A, Kapranov P, Kaminsky Z, Flanagan J, Assadzadeh A, Yau P, Virtanen C, Winegarden N, Cheng J, Gingeras T, Petronis A. Microarray-based DNA methylation profiling: technology and applications. Nuc. Acids Res. 2006, 34(2):528-542

Storey KB: Reptile freeze tolerance: Metabolism and gene expression (Review). Cryobiology, 2006, 52(1):1-16

Sun X, Wang JF, Tseng M, Young LT: Downregulation in components of the mitochondrial electron transport chain in the postmortem frontal cortex of subjects with bipolar disorder. J. Psychiatry Neuroscience, 2006, 31(3):189-196

Thomsen AR, Almstrup K, Nielsen JE, Sorensen IK, Petersen OW, Leffers H, Breinholt VM. Estrogenic Effect of Soy Isoflavones on Mammary Gland Morphogenesis and Gene Expression Profile. Tox Sci, 2006, 93(2):357

Thorsen M, Di Y, Tangemo C, Morillas M, Ahmadpour D, Van der Does C, Wagner A, et al. The MAPK Hog1p Modulates Fps1p-dependent Arsenite Uptake and Tolerance in Yeast. MBC, 2006, 17(10):4400

Vigano MA, Lamartine J, Testoni B, Merico D, Alotto D, Castagnoli C, Robert A, Candi E, Melino G, Gidrol X, Mantovani R: New p63 targets in keratinocytes identified by a genome-wide approach. EMBO, 2006, 25(21):5105-5116

Villeneuve, DJ, Hembruff, SL, Veitch, Z, Cecchetto, M, Dew, WA, Perissenti, AM. cDNA microarray analysis of isogenic paclitaxel- and doxorubicin-resistant breast tumour cell lines reveals distinct drug-specific genetic signatures of resistance. Breast Cancer Research and Treatment 2006, 96(1):17-39

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2005 (18 publications)
Balch C, Yan P, Craft T, Young S, Skalnik DG, Huang, Nephew, KP: Antimitogenic and chemosensitizing effects of the methylation inhibitor zebulaine in ovarion cander. Mol Cancer Ther, 2005, 4(10);1505-1514

Batt J, Bain J, Goncalves J, Michalski B, Plant P, Fahnestock M, Woodgett J. Differential gene expression profiling of short and long term denervated muscle. FASEB Journal, November 15, 2005

Chan KYY, Wong N, Lai PBS, Squire JA, Macgregor PF, Beheshti B, Albert M, To KF, Johnson PJ: Transcriptional profiling on chromosome 19p indicated frequent downregulation of ACP5 expression in hepatocellular carcinoma. Int J Cancer, 2005, 114(6):902-8

Chen L, Borozan I, Feld J, Sun J, Tannis LL, Coltescu C, Heathcote J, Edwards AM, McGilvray ID. Hepatic gene expression discriminates responders and nonresponders in treatmen of chronic hepatitis C viral infection. Gastroenterology 2005, 128(5):1437-44

Coles JG, Boscarino C, Takahashi M, Grant D, Chang A, Ritter J, Dai X, Du C, Musso G, Yamabi, H, Goncalves J, Kumar AS, Woodgett J, Lu H, Hannigan G. Cardioprotective stress response in the human fetal heart. J Thorac Cardiovasc Surg 2005, 129(5):1128-36

Duttagupta R, Tian B, Wilusz CJ, Khounh, DT, Soteropoulos P, Ouyang M, Dougherty JP, Peltz SW. Global Analysis of Pub1p Targets Reveals a Coordinate Control of Gene Expression through Modulation of Binding and Stability. Mol. Cell. Biol. 2005, 25(13):5499-513

Flatscher-Bader T, van der Brug M, Hwang JW, Gochee PA, Matsumoto I, Niwa S, Wilce PA: Alcohol-responsive genes in the frontal cortex and nucleus accumbens of human alcoholics. J Neurochemistry, 2005, 93(2):359-370

Hard ML, Abdolell M, Robinson BH, Koren G. Gene-expression analysis after alcohol exposure in the developing mouse. J Lab Clin Med 2005, 145(1):47-54

Heisler LE, Torti D, Boutros PC, Watson J, Chan C, Winegarden N, Takahashi M, Yau P, Huang TH, Farnham PJ, Jurisica I, Woodgett JR, Bremner R, Penn LZ, Der SD. CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome. Nucleic Acids Res 2005, 33(9):2952-61

Makitie AA, Pintor dos Reis P, Arora S, MacMillan C, Warner GC, Sukhai M, Dardick I, Perez-Ordonez B, Wells R, Brown D, Gilbert R, Freeman J, Gullane JP, Irish J, Kamal-Reid S: Molecular characterization of salivary gland malignancy using the Smgb-Tag transgenic mouse model. Laboratory Investigation, 2005, 85:947-961

Pang E, Hu Y, Chan KY-Y, Lai PB-S, Squire JA, Macgregor PF, Beheshti B, Albert M, Leung TW-T, Wong N. Karyotypic imbalances and differential gene expressions in the acquired doxorubicin resistance of hepatocellular carcinoma cells. Laboratory Investigation 2005, 85:664-674

Salahshor S, Goncalves J, Chetty R, Gallinger S, Woodgett JR: Differential gene expression profile reveals deregulation of pregnancy specific beta 1 glycoprotein 9 early during colorectal carcinogenesis. BMC Cancer, 2005, 5:66

Soleymanlou N, Jurisica I, Nevo O, Ietta F, Zhang X, Zamudio S, Post M, Caniggia I. Molecular Evidence of Placental Hypoxia in Preeclampsia. J Clin Endocrinol Metab 2005, 90(7):4299-4308

Subramanian M, Qiao,WB, Khanam N, Wilkins O, Der SD, Lalich JD, Bognar AL: Transcriptional regulation of the one-carbon metabolism regulon in Saccharomyces cerevisiae by Bas1p. Mol Microbiol. 2005, 57(1):53-69

Testa A, Donati G, Yan P, Romani F, Huang THM, Vigano MA, Mantovani R: Chromatin Immunoprecipitation (ChIP) on Chip Experiments Uncover a Widespread Distribution of NF-Y Binding CCAAT Sites Outside of Core Promoters. J Biol Chem, 2005, 280(14):13606-13615

Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schübeler D. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nature Genetics 2005, 37(8):853-862

Wong N, Chan KYY, Macgregor PF, Lai PBS, Squire JA, Beheshti B, Albert M, Leung TWT: Transcriptional Profiling Identifies Gene Expression Changes Associated with IFN-α Tolerance in Hepatitis C-Related Hepatocellular Carcinoma Cells. Clinical Cancer Res, 2005, 11:1319-1326

Yauk C, Berndt L, Williams A, Douglas GR. Automation of cDNA microarray hybridization and washing yields improved data quality. J Biochem Biophys Methods, 2005, 64:69

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2004 (27 publications)
Balasubramanyam K, Altaf M, Varier RA, Swaminathan V, Ravindran A, Sadhale PP, Kundu TK: Polyisoprenylated Benzophenone, Garcinol, a Natural Histone Acetyltransferase Inhibitor, Represses Chromatin Transcription and Alters Global Gene Expression. J Biol Chem, 2004, 279(32):33716-33726

Blackhall FH, Pintilie M, Wigle DA, Jurisica I, Liu N, Radulovich N, Johnston MR, Keshavjee S, Tsao M-S. Stability and Heterogeneity of Expression Profiles in Lung Cancer Specimens Harvested Following Surgical Resection. Neoplasia 2004, 6(6):761-7

Braam B, de Roos R, Dijk A, Boer P, Post JA, Kemmeren PPCW, Holstege FCP, Bluysen HAR, Koomans HA: Nitric oxide donor induces temporal and dose-dependent reduction of gene expression in human endothelial cells. Am J Physiol Heart Circ Physiol, 2004, 287:H1977-H1986

Carinci F, Pezzetti F, Volinia S, Francioso F, Arcelli D, Marchesini J, Caramelli E, Piattelli A: Analysis of MG63 osteoblastic-cell response to a new nanoporous implant surface by means of a microarray technology. Clin Oral Implants Res. 2004, 15(2):180-6

Carinci F, Pezzetti F, Volinia S, Francioso F, Arcelli D, Farina E, Piattelli A. Zirconium oxide: analysis of MG63 osteoblast-like cell response by means of a microarray technology. Biomaterials. 2004, 25(2):215-28

Carinci F, Pezzetti F, Volinia S, Laino G, Arcelli D, Caramelli E, Degidi M, Piattelli A. P-15 cell-binding domain derived from collagen: analysis of MG63 osteoblastic-cell response by means of a microarray technology. J Periodontol. 2004, 75(1):66-83

Casolari JM, Brown CR, Komili S, West J, Hieronymus H, Silver PA: Genome-wide localization of the nuclear transport machinery couplestranscriptional status and nuclear organization. Cell. 2004 117(4):427-39

Diosdado B, Wapenaar MC, Franke L, Duran KJ, Goerres MJ, Hadithi M, Crusius JBA, Meijer JWR, Duggan DJ, Mulder CJJ, Holstege FCP, Wijmenga C: A microarray screen for novel candidate genes in coeliac disease pathogenesis. Gut, 2004, 53:944-951

Dos Santos CC, Han B, Andrade CF, Bai X, Uhlig S, Hubmayr R, Tsang M, Lodyga, M, Keshavjee S, Slutsky AS, Liu M: DNA microarray analysis of gene expression in alveolar epithelial cells in response to TNFalpha, LPS, and cyclic stretch. Physiol Genomics, 2004, 19:331-342

Garcia R, Bermejo C, Grau C, Perez R, Rodriguez-Pena JM, et al. The Global Transcriptional Response to Transient Cell Wall Damage in Saccharomyces cerevisiae and Its Regulation by the Cell Integrity Signaling Pathway. J Biol Chem, 2004, 279(15):15183

Joseph J, Mudduluru G, Antony S, Vashistha S, Ajitkumar P, Somasundaram K: Expression profiling of sodium butyrate (NaB)-treated cells: identification of regulation of genes related to cytokine signaling and cancer metastasis by NaB. Oncogene, 2004, 23(37):6304-6315

Kirmizis A, Bartley SM, Kuzmichev A, Margueron R, Reinberg D, Green R, Farnham PJ: Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. Genes Dev. 2004, 18(13):1592-1605

Konstantinov IE, Arab S, Kharbanda RK, Li J, Cheung MMH, Cherepanov V, Downey GP, Liu PP, Cukerman E, Coles JG, Redington AN: The remote ischemic preconditioning stimulus modifies inflammatory gene expression in humans. Physiol Genomics, 2004, 19:143-150

Konstantinov IE, Coles JG, Boscarino C, Takahashi M, Goncalves J, Ritter J, Van Arsdell GS: Gene expression profiles in children undergoing cardiac surgery for right heart obstructive lesions. J Thorac Cardiovasc Surg 2004, 127:746-54.

Kurdistani SK, Tavazoie S, Grunstein M. Mapping global histone acetylation patterns to gene expression. Cell. 2004, 117(6):721-33.

Lee C-H., Macgregor,PF.: Drug Resistance and Microarrays: how far are we from personalized cancer treatment? Modern Drug Discovery, 7(7):45-49. Review.

Lee C-H., Macgregor PF.: Using Microarrays to Overcome Resistance to Chemotherapy in Cancer Patients. Pharmacogenomics, 2004, 5(6): 611-625. Review.

Lightfoot J, Hitzler JK, Zipursky A, Albert M, Macgregor PF.: Distinct gene signatures of transient leukemia and acute megakaryoblastic leukemia in Down syndrome. Leukemia 2004, 18(10):1617-1623

Paris J, Virtanen C, Lu Z, Takahashi M.: Identification of MEF2-regulated genes during muscle differentiation. Physiol. Genomics, 2004, 20:143-151

Pavey S, et al. : Microarray expression profiling in melanoma reveals a BRAF mutation signature. Oncogene, 2004, 23(23):4060-4067

Romero DG, Plonczynski M, Vergara GR Gomez-Sanchez EP, Gomez-Sanchez CE.: Angiotensin II early regulated genes in H295R human adrenocortical cells. Physiol Genomics 2004 19:106-16

Schollaert KL, Poisson JM, Searle JS, Schwanekamp JA, Tomlinson CR, Sanchez Y. A Role for Saccharomyces cerevisiae Chk1p in the Response to Replication Blocks. Mol Biol Cell, 2004, 15(9):4051

Urs S, Smith C, Campbell B, Saxton A, Taylor J, Jones Voy B. and Moustaid-Moussa N.: Gene Expression Profiling in human preadipocytes and adipocytes by microarray. J. Nutr., 2004 134:762-770

Walker PR, Smith B, Liu QY, Famili AF, Valdes JJ, Liu Z, Lach B: Data Mining of Gene Expression Changes in Alzheimer Brain. Artificial Intelligence in Medicine, 2004, 31(2):137-154

Wang D-Y, Fulthorpe R, Liss SN, Edwards SA.: Identification of estrogen-responsive genes by complementary deoxyribonucleic acid microarray and characterization of a novel early estrogen-induced gene: EEIG1. Mol. Endocrinol. 2004 18(2): 402-411

Zhang L, Hill RP. Hypoxia enhances metastatic efficiency by up-regulating Mdm2 cells and increasing resistance to apoptosis. Cancer research 2004, 64:4180-4189.

Zhang Y, Berger SA.: Increased calcium influx and ribosomal content correlate with resistance to endoplasmic reticulum stress-induced cell death in mutant leukemia cell lines. J. Biol. Chem. 2004 279(8):6507-6516

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2003 (16 publications)
Andrulis IL, Gokgoz N, Bull SB.: Characterization of Gene Expression Patterns for Classification of Breast Carcinomas in Expression Profiling of Human Tumors: Diagnostics and Research Applications. Humana Press 2003, (eds.) M. Ladanyi and W. Gerald. 121-145

Beheshti B, Braude I, Marrano P, Thorner P, Zielenska M, Squire JA.: Chromosomal localization of DNA amplifications in neuroblastoma tumors using cDNA microarray comparative genomic hybridization. Neoplasia. 2003, 5(1):53-62

Carinci F, Francioso F, Piattelli A, Rubini C, Fioroni M, Evangelisti R, Arcelli D, Tosi L, Pezzetti F, Carinci P, Volinia S.: Genetic expression profiling of six odontogenic tumors. J Dent Res. 2003, 82(7):551-7.

Carinci F, Francioso F, Rubini C, Fioroni M, Tosi L, Pezzetti F, Venturoli L, Volinia S, Piattelli A.: Genetic portrait of malignant granular cell odontogenic tumour. Oral Oncol. 2003, 39(1):69-77

Carinci F, Pezzetti F, Volinia S, Francioso F, Arcelli D, Marchesini J,Scapoli L, Piattelli A.: Analysis of osteoblast-like MG63 cells' response to a rough implant surface by means of DNA microarray. J Oral Implantol. 2003, 29(5):215-20.

Carinci F, Volinia S, Rubini C, Fioroni M, Francioso F, Arcelli D, Pezzetti F, Piattelli A. Genetic profile of clear cell odontogenic carcinoma. J Craniofac Surg. 2003, 14(3):356-62.

Carinci F, Volinia S, Pezzetti F, Francioso F, Tosi L, Piattelli A. Titanium-cell interaction: analysis of gene expression profiling. J Biomed Mater Res. 2003 15;66B(1):341-6.

Chen L, Goryachev A, Sun J, Kim P, Zhang H, Phillips J, Squire J, Macgregor PF, Lebel S, Edwards AM, Cao Q, Furuya N.: Altered expression of genes involved in hepatic morphogenesis and fibrogenesis are identified by cDNA microarray analysis in billiary atresia. Hepatology 2003, 38(3), 567-576

Costanzo M, Schub O, Andrews B.: G1 Transcription Factors Are Differentially Regulated in Saccharomyces cerevisiae by the Swi6-Binding Protein Stb1. Mol. Cell. Biol. 2003, 23(14):5064-5077

Dennis P, Edwards EA, Liss SN, Fulthorpe R: Monitoring Gene Expression in Mixed Microbial Communities by Using DNA Microarrays. Appl Environ Microbiol, 2003, 69(2):769-778

Francois E, Wang DY, Fulthorpe R, Liss SN, Edwards EA.: DNA microarrays for detecting endocrine-disrupting compounds. Biotechnol Adv. 2003, 22(1-2):17-26.

Gilbert RW, Costain WJ, Blanchard ME, Mullen KL, Currie RW, Robertson HA.: DNA Microarray Analysis of Hippocampal Gene Expression Measured Twelve Hours After Hypoxia-Ischemia in the Mouse. Journal of Cerebral Blood Flow & Metabolism. 2003, 23: 1195-1211

Macgregor PF. Gene expression in cancer: the application of microarrays. Expert Rev Mol Diagn. 2003, 3(2):185-200. Review.

Squire JA, Pei J, Marrano P, Beheshti B, Bayani J, Lim G, Moldovan L, Zielenska M.: High-resolution mapping of amplifications and deletions in pediatric osteosarcoma by use of CGH analysis of cDNA microarrays. Genes Chromosomes Cancer. 2003, 38(3):215-25.

Von Schroeder HP, Veillette CJ, Payandeh J, Qureshi A, Heersche, JN.: Endothelin-1 promotes osteoprogenitor proliferation and differentiation in fetal rat calvarial cell cultures. Bone 2003, 33:673-684.

Winegarden, N.Microarrays in cancer: moving from hype to clinical reality. Lancet, 2003, 362(9394):1428 Commentary

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2002 (11 publications)
Bayani J, Brenton JD, Macgregor PF, Beheshti B, Albert M, Nallainathan D, Karaskova J, Rosen B, Murphy J, Laframboise J, Zanke B, and Squire JA: Parallel Analysis of Sporadic Primary Ovarian Carcinomas by Spectral Karyotyping, Comparative Genomic Hybridization, and Expression Microarrays. Cancer Research, 2002, 62(12):3466-3476

Carinci F, Bodo M, Tosi L, Francioso F, Evangelisti R, Pezzetti F, Scapoli L, Martinelli M, Baroni T, Stabellini G, Carinci P, Bellucci C, Lilli C, Volinia S.: Expression profiles of craniosynostosis-derived fibroblasts. Mol Med. 2002, 8(10):638-44

Claudio JO, Masih-Khan E, Tang H, Goncalves J, Voralia M, Li ZH, Nadeem V, Cukerman E, Francisco-Pabalan O, Liew CC, Woodgett JR, Stewart AK.: A molecular compendium of genes expressed in multiple myeloma. Blood. 2002, 100(6):2175-2186

Francioso F, Carinci F, Tosi L, Scapoli L, Pezzetti F, Passerella E, Evangelisti R, Pastore A, Pelucchi S, Piattelli A, Rubini C, Fioroni M, Carinci P, Volinia S.: Identification of differentially expressed genes in human salivary gland tumors by DNA microarrays. Mol Cancer Ther. 2002 May;1(7):533-8.

Haq R, Brenton JD, Takahashi M, Finan D, Rottapel R, Zanke B.: Constitutive p38HOG Mitogen-activated Protein Kinase Activation Induces Permanent Cell Cycle Arrest and Senescence. Cancer Res. 2002, 62(17):5076-5082

Huang D, Moffat J, Andrews B: Dissection of a Complex Phenotype by Functional Genomics Reveals Roles for the Yeast Cyclin-Dependent Protein Kinase Pho85 in Stress Adaptation and Cell Integrity. (2002) Molecular and Cellular Biology, 22(14):5076-5088

Iscove NN, Barbara M, Gu M, Gibson M, Modi C, Winegarden N.: Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. Nat Biotechnol. 2002, 20(9):940-943

Kurdistani SK, Robyr D, Tavazoie S, Grunstein M. Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nat Genet. 2002, 31(3):248-54. Epub 2002 Jun 24

Macgregor PF, Squire JA: Application of microarrays to the analysis of gene expression in cancer. Clin Chem. 2002, 48(8):1170-7

Sultan M, Wigle DA, Cumbaa CA, Maziarz M, Glasgow J, Tsao MS, Jurisica I: Binary tree-structured vector quantization approach to clustering and visualizing microarray data. Bioinformatics. 2002, 18 Suppl 1:S111-S119

Wigle DA, Jurisica I, Radulovich N, Rossant J, Pintilie M, Lu N, Lu C, Woodgett J, Seiden I, Johnston M, Keshavjee S, Darling G, Winton T, Breitkreutz BJ, Jorgenson P, Tyers M, Shepard FA, Tsao MS: Molecular profiling of disease-free survival in non-small cell lung cancer. (2002) Cancer Research, 62(11):3005-3008

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2001 (6 publications)
Baetz K, Moffat J, Haynes J, Chang M, Andrews B: Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4. Mol Cell Biol. 2001, (19):6515-28

Foury F, Talibi D. Mitochondrial Control of Iron Homeostasis. A Genome Wide Analysis of Gene Expression in a Yeast Frataxin-Deficient Strain. J Biol Chem, 2001, 276(11):7762-7768

Goryachev AB, Macgregor PF, Edwards AM: Unfolding of microarray data. (2001) Journal of Computational Biology, 8(4):443-461.

Mossman KL., Macgregor PF, Rozmus J, Goryachev A, Edwards A, Smiley JR: Herpes simplex virus triggers and then disarms a host antiviral response. (2001) Journal of Virology, 75(2):750-758.

Traven A, Wong JMS, Xu D, Sopta M, Ingles CJ: Interorganellar Communication: Altered Nuclear Gene Expression Profiles in a yeast mitochondrial DNA mutant. (2001) Journal of Biological Chemistry, 276:4020-4027.

Yarwood SJ , Woodgett JR: Extracellular matrix composition determines the transcriptional response to epidermal growth factor receptor activation. (2001) Proc. Natl. Acad. Sci. USA, 98(8):4472-4477.

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2000 (1 publication)
Hemming SA, Jansma DB, Macgregor PF, Goryachev A, Friesen JD, and Edwards AM: 18- RNA Polymerase II Subunit Rpb9 regulates transcription elongation in vivo. (2000) Journal of Biological Chemistry, 275 (45):35506-11

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